Molecular Mechanics

MDynaMix     Division of Physical Chemistry, Stockholm University

Amber - Assisted Model Building with Energy Refinement

GROMACS

CHARMM     Harvard University and Accelrys, Inc.

BOSS & MCPRO - Biochemical and Organic Simulation System
    Yale University, Department of Chemistry

GROMOS     BIOMOS.

VMD & NAMD - Visual Molecular Dynamics
    Theoretical and Computational Biophysics Group.

TINKER     Chemistry Department, University of New Mexico.

PCMODEL     Serena Software.

YASARA - Yet Another Scientific Artificial Application     YASARA Biosciences.

Q     Molecular dynamics program
    Johan Åqvist Group at Uppsala University, Uppsala, Sweden.

MCCCS Towhee     Sandia National Laboratories.

LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
    Sandia Corporation.

Moldy     University of Oxford.

MMC     Metropolis Monte Carlo program.

ECEPPAK     Cornell University.

ICM     Molsoft.

Software for


Ascalaph


Freeware